Changelog

All notable changes to this project will be documented in this file.

The format is based on Keep a Changelog, and this project adheres to Semantic Versioning.

1.5.0 - 2022-11-25

Added

• Citeable in Zenodo!

• New extra dependency groups for install as pip install pymech[opt] and pip install pymech[vtk] respectively. There is also a [full] group which implies both [opt] and [vtk].

• Performance benchmarks in documentation.

• Dataclass pymech.neksuite.field.Header using attrs for reading file headers

• Function pymech.neksuite.field.read_header()

• Module pymech.meshtools for manipulating meshes

• Xarray backend pymech. See pymech.dataset

• Function pymech.neksuite.readma2()

Changed

• Attributes lr1 and var pymech.core.Elem are tuples instead of lists

• Attributes of pymech.core.DataLims are now immutable tuples

• pymech.dataset.open_mfdataset() is now a partial function. This change should be fully backwards compatible

• pymech.neksuite.readnek() has a dtype option to set the floating point data type.

• pymech.neksuite is now a sub-package with three modules.

Deprecated

• Module pymech.exadata is deprecated in favour of pymech.core. See pymech.exadata for more information on migrating your code.

• Function pymech.vtksuite.exa2vtk() is deprecated in favour of pymech.vtksuite.hexa2vtk().

Removed

• Test data files from the pymech git repository. The files are now available at https://github.com/eX-Mech/pymech-test-data/

Fixed

• Logging configuration which does not break other loggers.

1.4.1 - 2021-05-07

Backwards compatible release with a lot of housekeeping and some usability improvements. This will be the last release to support Python 3.6 and Xarray < 0.18.0

Added

• Common function available from the top-level import pymech as pm

• Extras requirements to install mayavi and rich with pip install 'pymech[full]'

• Experimental pymech.vtksuite.writevtk()

• Environment variable PYMECH_DEBUG to control logging level. See pymech.log

Changed

• Swap optional colorlog logger with rich in pymech.log

• Refresh pymech.vtksuite.exa2vtk() implementation on an experimental basis

Fixed

• Format entire code base with black

• Improve docs

1.4.0 - 2020-11-16

Added

• Functions readre2 and writere2 to read/write binary .re2 Nek5000 meshes

Fixed

• indexing bug in the boundary conditions parameters in readrea

Changed

• Ignore some invalid ‘E’ internal boundary conditions in readrea since they are written this way by re2torea and ignored by Nek5000.

1.3.3 - 2020-09-29

Fixed

• Various fixes – including writing element map, correct order for min/max metadata – in writenek

Added

• pymech.core.HexaData.merge() to merge meshes together and build proper connectivity

1.3.2 - 2020-09-23

Fixed

• writenek detects system endianness and byte-swaps arrays, if needed, before writing

Removed

• Warnings while reading/writing scalars

1.3.1 - 2020-09-17

Changed

• use ndarray.tofile() for faster output

1.3.0.post0 - 2020-07-16

Fixed

• Packaging issue of sdist and wheel. Now uses find_packages instead of package name.

1.3.0 - 2020-07-16

Added

• Dataset module which extends xarray

Changed

• Faster readnek function uses less for loops

• Lazy load pymech.core.DataLims limits as properties

• Autogenerate documentation using sphinx extension autodoc

1.2.0 - 2020-03-18

Added

• License GPL v3 or later

Changed

• Miscellaneous improvements in documentation, testing and packaging